Last updated on 2026-02-03 14:51:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.9 | 7.80 | 289.61 | 297.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.9 | 5.20 | 179.27 | 184.47 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.9 | 14.00 | 467.18 | 481.18 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.1.9 | 13.00 | 463.23 | 476.23 | ERROR | |
| r-devel-windows-x86_64 | 2.1.9 | 11.00 | 272.00 | 283.00 | OK | |
| r-patched-linux-x86_64 | 2.1.9 | 7.99 | 266.09 | 274.08 | OK | |
| r-release-linux-x86_64 | 2.1.9 | 4.47 | 264.39 | 268.86 | OK | |
| r-release-macos-arm64 | 2.1.9 | OK | ||||
| r-release-macos-x86_64 | 2.1.9 | 4.00 | 257.00 | 261.00 | OK | |
| r-release-windows-x86_64 | 2.1.9 | 10.00 | 256.00 | 266.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.9 | OK | ||||
| r-oldrel-macos-x86_64 | 2.1.9 | 4.00 | 182.00 | 186.00 | OK | |
| r-oldrel-windows-x86_64 | 2.1.9 | 13.00 | 352.00 | 365.00 | OK |
Version: 2.1.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Centroid-Vectors.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Centroid-Vectors.Rmd’
--- re-building ‘Customising-Plots-Manually.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Customising-Plots-Manually.Rmd’
--- re-building ‘Ellipse-Overlap.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Ellipse-Overlap.Rmd’
--- re-building ‘Introduction-to-SIBER.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Introduction-to-SIBER.Rmd’
--- re-building ‘Plot-SIA-ggplot2.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Plot-SIA-ggplot2.Rmd’
--- re-building ‘Plot-posterior-ellipses.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Plot-posterior-ellipses.Rmd’
--- re-building ‘Points-Inside-Outside-Ellipse.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Points-Inside-Outside-Ellipse.Rmd’
--- re-building ‘Test-convergence.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Test-convergence.Rmd’
--- re-building ‘kapow-example.Rmd’ using rmarkdown
Quitting from kapow-example.Rmd:90-131 [make-packs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: 11.
Caused by error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
▆
1. ├─purrr::map(...)
2. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
3. │ ├─purrr:::with_indexed_errors(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ ├─purrr:::call_with_cleanup(...)
6. │ └─SIBER (local) .f(.x[[i]], ...)
7. │ └─... %>% do(calcBoundaries(.data))
8. ├─dplyr::do(., calcBoundaries(.data))
9. └─dplyr::group_by_(., .dots = group)
10. └─dplyr:::lazy_defunct("group_by")
11. └─lifecycle::deprecate_stop(...)
12. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'kapow-example.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: 11.
Caused by error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘kapow-example.Rmd’
--- re-building ‘siber-comparing-communities.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘siber-comparing-communities.Rmd’
--- re-building ‘siber-comparing-populations.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘siber-comparing-populations.Rmd’
SUMMARY: processing the following file failed:
‘kapow-example.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc