Last updated on 2026-02-03 14:51:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 6.4.0 | 19.48 | 155.47 | 174.95 | OK | |
| r-devel-linux-x86_64-debian-gcc | 6.4.0 | 14.31 | 103.38 | 117.69 | OK | |
| r-devel-linux-x86_64-fedora-clang | 6.4.0 | 32.00 | 248.33 | 280.33 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 6.4.0 | 29.00 | 248.39 | 277.39 | ERROR | |
| r-devel-windows-x86_64 | 6.4.0 | 24.00 | 195.00 | 219.00 | OK | |
| r-patched-linux-x86_64 | 6.4.0 | 19.45 | 137.68 | 157.13 | OK | |
| r-release-linux-x86_64 | 6.4.0 | 18.05 | 140.88 | 158.93 | OK | |
| r-release-macos-arm64 | 6.4.0 | OK | ||||
| r-release-macos-x86_64 | 6.4.0 | 13.00 | 147.00 | 160.00 | OK | |
| r-release-windows-x86_64 | 6.4.0 | 22.00 | 164.00 | 186.00 | OK | |
| r-oldrel-macos-arm64 | 6.4.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 6.4.0 | 13.00 | 143.00 | 156.00 | NOTE | |
| r-oldrel-windows-x86_64 | 6.4.0 | 29.00 | 218.00 | 247.00 | OK |
Version: 6.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [75s/104s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SomaDataIO)
═══════════════════════════════════════════════════════════════════════ Legal ══
SomaDataIO™
Copyright © 2025 Standard BioTools, Inc.
The `SomaDataIO` package is licensed under the MIT license
(`LICENSE.md`) and is intended solely for research use only ("RUO")
purposes. The code contained herein may *not* be used for
diagnostic, clinical, therapeutic, or other commercial purposes.
Further, "SomaDataIO" and "SomaLogic" are trademarks owned by
Standard BioTools, Inc. No license is hereby granted to these
trademarks other than for purposes of identifying the origin or
source of the Software. The above copyright notice and this
permission notice shall be included in all copies or substantial
portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
HOLDER(S) BE LIABLE FOR ANY CLAIM, DAMAGES, WHETHER DIRECT OR
INDIRECT, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT
OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
════════════════════════════════════════════════════════════════════════════════
Attaching package: 'SomaDataIO'
The following object is masked from 'package:stats':
filter
>
> test_check("SomaDataIO")
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
Saving _problems/test-dplyr-verbs-135.R
x The object is not a `soma_adat` class object: "data.frame"
x Header.Meta and/or Col.Meta missing from attributes.
x Header.Meta and/or Col.Meta missing from attributes.
x Header.Meta is missing: "HEADER", "COL_DATA", and "ROW_DATA"
x Col.Meta is missing: "SeqId", "Dilution", "Target", and "Units"
x Col.Meta is not a tibble! -> "list"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmpUXs0as/working_dir/RtmpWQOS2q/write-1f652b496f8476.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmpUXs0as/working_dir/RtmpWQOS2q/write-1f652b3e49a589.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmpUXs0as/working_dir/RtmpWQOS2q/write-1f652b26c6fe4a.txt"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmpUXs0as/working_dir/RtmpWQOS2q/write-1f652b75edb8f4.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmpUXs0as/working_dir/RtmpWQOS2q/write-1f652b407b2d8e.adat"
[ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
══ Skipped tests (35) ══════════════════════════════════════════════════════════
• On CRAN (34): 'test-S3-median.R:4:1', 'test-S3-merge.R:3:1',
'test-S3-print.R:11:1', 'test-S3-print.R:16:1', 'test-S3-print.R:21:1',
'test-S3-print.R:26:1', 'test-S3-print.R:32:1', 'test-S3-summary.R:49:1',
'test-diffAdats.R:6:1', 'test-diffAdats.R:10:1', 'test-diffAdats.R:15:1',
'test-diffAdats.R:20:1', 'test-diffAdats.R:27:1', 'test-diffAdats.R:34:1',
'test-getAnalytes.R:23:3', 'test-getTargetNames.R:11:1',
'test-groupGenerics.R:77:1', 'test-groupGenerics.R:182:1',
'test-is-intact-attr.R:44:1', 'test-loadAdatsAsList.R:21:1',
'test-loadAdatsAsList.R:27:1', 'test-loadAdatsAsList.R:57:1',
'test-parseCheck.R:8:1', 'test-parseHeader.R:7:1',
'test-preProcessAdat.R:2:1', 'test-preProcessAdat.R:22:1',
'test-read-adat.R:12:1', 'test-read-adat.R:38:1',
'test-scaleAnalytes.R:65:1', 'test-scaleAnalytes.R:71:1',
'test-utils-read-adat.R:9:1', 'test-utils-read-adat.R:151:1',
'test-utils-release.R:3:1', 'test-utils-release.R:16:1'
• On Linux (1): 'test-preProcessAdat.R:7:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dplyr-verbs.R:135:3'): `left_join()` method produces expected output ──
Expected `names(attributes(new))` to equal `names(attributes(data))`.
Differences:
actual | expected
[1] "names" | "names" [1]
[2] "row.names" - "class" [2]
[3] "class" - "row.names" [3]
[4] "Header.Meta" | "Header.Meta" [4]
[5] "Col.Meta" | "Col.Meta" [5]
[6] "file_specs" | "file_specs" [6]
[ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
Deleting unused snapshots: 'preProcessAdat/preProcessAdat_qc_plot_Age.png'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 6.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [74s/170s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SomaDataIO)
═══════════════════════════════════════════════════════════════════════ Legal ══
SomaDataIO™
Copyright © 2025 Standard BioTools, Inc.
The `SomaDataIO` package is licensed under the MIT license
(`LICENSE.md`) and is intended solely for research use only ("RUO")
purposes. The code contained herein may *not* be used for
diagnostic, clinical, therapeutic, or other commercial purposes.
Further, "SomaDataIO" and "SomaLogic" are trademarks owned by
Standard BioTools, Inc. No license is hereby granted to these
trademarks other than for purposes of identifying the origin or
source of the Software. The above copyright notice and this
permission notice shall be included in all copies or substantial
portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
HOLDER(S) BE LIABLE FOR ANY CLAIM, DAMAGES, WHETHER DIRECT OR
INDIRECT, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT
OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
════════════════════════════════════════════════════════════════════════════════
Attaching package: 'SomaDataIO'
The following object is masked from 'package:stats':
filter
>
> test_check("SomaDataIO")
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
v ADAT passed all checks and traps.
Saving _problems/test-dplyr-verbs-135.R
x The object is not a `soma_adat` class object: "data.frame"
x Header.Meta and/or Col.Meta missing from attributes.
x Header.Meta and/or Col.Meta missing from attributes.
x Header.Meta is missing: "HEADER", "COL_DATA", and "ROW_DATA"
x Col.Meta is missing: "SeqId", "Dilution", "Target", and "Units"
x Col.Meta is not a tibble! -> "list"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmptYzE9O/working_dir/Rtmp2iMd4N/write-18b2d21d64b0c5.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmptYzE9O/working_dir/Rtmp2iMd4N/write-18b2d27dc25519.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmptYzE9O/working_dir/Rtmp2iMd4N/write-18b2d27daad019.txt"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmptYzE9O/working_dir/Rtmp2iMd4N/write-18b2d23368a2e9.adat"
v ADAT passed all checks and traps.
v ADAT written to: "/tmp/RtmptYzE9O/working_dir/Rtmp2iMd4N/write-18b2d24e11a539.adat"
[ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
══ Skipped tests (35) ══════════════════════════════════════════════════════════
• On CRAN (34): 'test-S3-median.R:4:1', 'test-S3-merge.R:3:1',
'test-S3-print.R:11:1', 'test-S3-print.R:16:1', 'test-S3-print.R:21:1',
'test-S3-print.R:26:1', 'test-S3-print.R:32:1', 'test-S3-summary.R:49:1',
'test-diffAdats.R:6:1', 'test-diffAdats.R:10:1', 'test-diffAdats.R:15:1',
'test-diffAdats.R:20:1', 'test-diffAdats.R:27:1', 'test-diffAdats.R:34:1',
'test-getAnalytes.R:23:3', 'test-getTargetNames.R:11:1',
'test-groupGenerics.R:77:1', 'test-groupGenerics.R:182:1',
'test-is-intact-attr.R:44:1', 'test-loadAdatsAsList.R:21:1',
'test-loadAdatsAsList.R:27:1', 'test-loadAdatsAsList.R:57:1',
'test-parseCheck.R:8:1', 'test-parseHeader.R:7:1',
'test-preProcessAdat.R:2:1', 'test-preProcessAdat.R:22:1',
'test-read-adat.R:12:1', 'test-read-adat.R:38:1',
'test-scaleAnalytes.R:65:1', 'test-scaleAnalytes.R:71:1',
'test-utils-read-adat.R:9:1', 'test-utils-read-adat.R:151:1',
'test-utils-release.R:3:1', 'test-utils-release.R:16:1'
• On Linux (1): 'test-preProcessAdat.R:7:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dplyr-verbs.R:135:3'): `left_join()` method produces expected output ──
Expected `names(attributes(new))` to equal `names(attributes(data))`.
Differences:
actual | expected
[1] "names" | "names" [1]
[2] "row.names" - "class" [2]
[3] "class" - "row.names" [3]
[4] "Header.Meta" | "Header.Meta" [4]
[5] "Col.Meta" | "Col.Meta" [5]
[6] "file_specs" | "file_specs" [6]
[ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
Deleting unused snapshots: 'preProcessAdat/preProcessAdat_qc_plot_Age.png'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 6.4.0
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
data 3.8Mb
extdata 1.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64