Last updated on 2024-06-09 14:49:54 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| admiral | 3 | 2 | 8 |
| admiral.test | 13 | ||
| admiraldev | 13 |
Current CRAN status: ERROR: 3, NOTE: 2, OK: 8
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘adsl.Rmd’ using rmarkdown
--- finished re-building ‘adsl.Rmd’
--- re-building ‘bds_exposure.Rmd’ using rmarkdown
--- finished re-building ‘bds_exposure.Rmd’
--- re-building ‘bds_finding.Rmd’ using rmarkdown
--- finished re-building ‘bds_finding.Rmd’
--- re-building ‘bds_tte.Rmd’ using rmarkdown
--- finished re-building ‘bds_tte.Rmd’
--- re-building ‘generic.Rmd’ using rmarkdown
--- finished re-building ‘generic.Rmd’
--- re-building ‘higher_order.Rmd’ using rmarkdown
--- finished re-building ‘higher_order.Rmd’
--- re-building ‘hys_law.Rmd’ using rmarkdown
--- finished re-building ‘hys_law.Rmd’
--- re-building ‘imputation.Rmd’ using rmarkdown
--- finished re-building ‘imputation.Rmd’
--- re-building ‘lab_grading.Rmd’ using rmarkdown
--- finished re-building ‘lab_grading.Rmd’
--- re-building ‘occds.Rmd’ using rmarkdown
--- finished re-building ‘occds.Rmd’
--- re-building ‘pk_adnca.Rmd’ using rmarkdown
Quitting from lines 1221-1245 [unnamed-chunk-40] (pk_adnca.Rmd)
Error: processing vignette 'pk_adnca.Rmd' failed with diagnostics:
Dataset contains duplicate records with respect to `STUDYID`, `USUBJID`, `AFRLT` and `EVID`
Run `get_duplicates_dataset()` to access the duplicate records
--- failed re-building ‘pk_adnca.Rmd’
--- re-building ‘queries_dataset.Rmd’ using rmarkdown
--- finished re-building ‘queries_dataset.Rmd’
--- re-building ‘questionnaires.Rmd’ using rmarkdown
--- finished re-building ‘questionnaires.Rmd’
--- re-building ‘visits_periods.Rmd’ using rmarkdown
--- finished re-building ‘visits_periods.Rmd’
SUMMARY: processing the following file failed:
‘pk_adnca.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: data for non-ASCII characters
Result: NOTE
Note: found 12 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concepts_conventions.Rmd’
...
> adcm
STUDYID USUBJID CMTRT
1 XXX XXX-1 ASPIRIN
> adcm %>% select(get_admiral_option("subject_keys"))
When sourcing ‘concepts_conventions.R’:
Error: Can't select columns with `get_admiral_option("subject_keys")`.
✖ `get_admiral_option("subject_keys")` must be numeric or character, not a list.
Execution halted
‘adsl.Rmd’ using ‘UTF-8’... [5s/5s] OK
‘bds_exposure.Rmd’ using ‘UTF-8’... [2s/2s] OK
‘bds_finding.Rmd’ using ‘UTF-8’... [4s/4s] OK
‘bds_tte.Rmd’ using ‘UTF-8’... [4s/4s] OK
‘concepts_conventions.Rmd’ using ‘UTF-8’... failed
‘generic.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘higher_order.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘hys_law.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘imputation.Rmd’ using ‘UTF-8’... [1s/2s] OK
‘lab_grading.Rmd’ using ‘UTF-8’... [2s/2s] OK
‘occds.Rmd’ using ‘UTF-8’... [2s/3s] OK
‘pk_adnca.Rmd’ using ‘UTF-8’... [4s/4s] OK
‘queries_dataset.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘questionnaires.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘visits_periods.Rmd’ using ‘UTF-8’... [2s/2s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concepts_conventions.Rmd’
...
> adcm
STUDYID USUBJID CMTRT
1 XXX XXX-1 ASPIRIN
> adcm %>% select(get_admiral_option("subject_keys"))
When sourcing ‘concepts_conventions.R’:
Error: Can't select columns with `get_admiral_option("subject_keys")`.
✖ `get_admiral_option("subject_keys")` must be numeric or character, not a list.
Execution halted
‘adsl.Rmd’ using ‘UTF-8’... [8s/12s] OK
‘bds_exposure.Rmd’ using ‘UTF-8’... [3s/5s] OK
‘bds_finding.Rmd’ using ‘UTF-8’... [5s/8s] OK
‘bds_tte.Rmd’ using ‘UTF-8’... [7s/11s] OK
‘concepts_conventions.Rmd’ using ‘UTF-8’... failed
‘generic.Rmd’ using ‘UTF-8’... [5s/7s] OK
‘higher_order.Rmd’ using ‘UTF-8’... [5s/7s] OK
‘hys_law.Rmd’ using ‘UTF-8’... [2s/3s] OK
‘imputation.Rmd’ using ‘UTF-8’... [2s/3s] OK
‘lab_grading.Rmd’ using ‘UTF-8’... [3s/4s] OK
‘occds.Rmd’ using ‘UTF-8’... [4s/6s] OK
‘pk_adnca.Rmd’ using ‘UTF-8’... [7s/10s] OK
‘queries_dataset.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘questionnaires.Rmd’ using ‘UTF-8’... [5s/8s] OK
‘visits_periods.Rmd’ using ‘UTF-8’... [3s/4s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13